2PJJ Hydrolase date Apr 16, 2007
title E. Coli Lytic Transglycosylase Mlta-D308a In Apo-1 Form
authors K.E.Van Straaten, B.W.Dijkstra, A.M.W.H.Thunnissen
compound source
Molecule: Membrane-Bound Lytic Murein Transglycosylase A
Chain: A
Synonym: Murein Hydrolase A; Mlt38
Ec: 3.2.1.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Mlta, Mlt
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmss
symmetry Space Group: P 31 2 1
R_factor 0.210 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.900 104.900 109.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.46 Å
ligand
enzyme Hydrolase E.C.3.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of Escherichia coli Lytic transglycosylase MltA with bound chitohexaose: implications for peptidoglycan binding and cleavage., van Straaten KE, Barends TR, Dijkstra BW, Thunnissen AM, J Biol Chem. 2007 Jul 20;282(29):21197-205. Epub 2007 May 14. PMID:17502382
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (2pjj.pdb1.gz) 57 Kb
  • CSU: Contacts of Structural Units for 2PJJ
  • Likely Quarternary Molecular Structure file(s) for 2PJJ
  • Structure Factors (263 Kb)
  • Retrieve 2PJJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PJJ from S2C, [Save to disk]
  • Re-refined 2pjj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PJJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PJJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2PJJ, from MSDmotif at EBI
  • Fold representative 2pjj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pjj_A] [2pjj]
  • SWISS-PROT database: [P0A935]
  • Domain organization of [MLTA_ECOLI] by SWISSPFAM
  • Domain found in 2PJJ: [MltA ] by SMART
  • Other resources with information on 2PJJ
  • Community annotation for 2PJJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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