2PJP Translation Rna date Apr 16, 2007
title Structure Of The Mrna-Binding Domain Of Elongation Factor Se E.Coli In Complex With Secis Rna
authors N.Soler, D.Fourmy, S.Yoshizawa
compound source
Molecule: Secis Rna
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: In Vitro Transcription With T7 Rna Polymeras

Molecule: Selenocysteine-Specific Elongation Factor
Chain: A
Synonym: Selb Translation Factor
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Selb, Fdha
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
symmetry Space Group: C 1 2 1
R_factor 0.200 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.498 56.515 48.414 90.00 95.60 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CA, CL, MG, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insight into a molecular switch in tandem winged-helix motifs from elongation factor SelB., Soler N, Fourmy D, Yoshizawa S, J Mol Biol. 2007 Jul 20;370(4):728-41. Epub 2007 May 10. PMID:17537456
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (2pjp.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 2PJP
  • CSU: Contacts of Structural Units for 2PJP
  • Likely Quarternary Molecular Structure file(s) for 2PJP
  • Structure Factors (132 Kb)
  • Retrieve 2PJP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PJP from S2C, [Save to disk]
  • Re-refined 2pjp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PJP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PJP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PJP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pjp] [2pjp_B] [2pjp_A]
  • SWISS-PROT database: [P14081]
  • Domain organization of [SELB_ECOLI] by SWISSPFAM
  • Other resources with information on 2PJP
  • Community annotation for 2PJP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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