2PKD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL enzyme
note 2PKD is a representative structure
Primary referenceStructure of CD84 provides insight into SLAM family function., Yan Q, Malashkevich VN, Fedorov A, Fedorov E, Cao E, Lary JW, Cole JL, Nathenson SG, Almo SC, Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10583-8. Epub 2007 Jun 11. PMID:17563375
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (2pkd.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (2pkd.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (2pkd.pdb3.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2PKD
  • CSU: Contacts of Structural Units for 2PKD
  • Likely Quarternary Molecular Structure file(s) for 2PKD
  • Structure Factors (1772 Kb)
  • Retrieve 2PKD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PKD from S2C, [Save to disk]
  • Re-refined 2pkd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2PKD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pkd] [2pkd_A] [2pkd_B] [2pkd_C] [2pkd_D] [2pkd_E] [2pkd_F]
  • SWISS-PROT database: [Q9UIB8]
  • Domain found in 2PKD: [IG ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science