2PLR Transferase date Apr 20, 2007
title Crystal Structure Of Dtmp Kinase (St1543) From Sulfolobus To Strain7
authors S.P.Kanaujia, J.Jeyakanthan, Z.A.Rafi, K.Sekar, N.Nakagawa, A.Ebi S.Kuramitsu, A.Shinkai, Y.Shiro, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Probable Thymidylate Kinase
Chain: A, B
Synonym: Dtmp Kinase
Ec: 2.7.4.9
Engineered: Yes
Organism_scientific: Sulfolobus Tokodaii
Organism_taxid: 273063
Strain: 7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21 Condon Plus (De3)-Ril-X
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.523 62.873 137.332 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand 1PE, CL, DTT, EDO, EPE, MSE, PEG, PG4, PGE, PO4 enzyme Transferase E.C.2.7.4.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • thymidylate kinase activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (2plr.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 2PLR
  • CSU: Contacts of Structural Units for 2PLR
  • Likely Quarternary Molecular Structure file(s) for 2PLR
  • Structure Factors (845 Kb)
  • Retrieve 2PLR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PLR from S2C, [Save to disk]
  • Re-refined 2plr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PLR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PLR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PLR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2plr] [2plr_B] [2plr_A]
  • SWISS-PROT database: [Q970Q8]
  • Domain organization of [KTHY2_SULTO] by SWISSPFAM
  • Other resources with information on 2PLR
  • Community annotation for 2PLR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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