2PNO Lyase date Apr 24, 2007
title Crystal Structure Of Human Leukotriene C4 Synthase
authors H.Ago, Y.Kanaoka, D.Irikura, B.K.Lam, T.Shimamura, K.F.Austen, M.M
compound source
Molecule: Leukotriene C4 Synthase
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Synonym: Leukotriene-C4, Synthase, Ltc4 Synthase
Ec: 4.4.1.20
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Schizosaccharomyces Pombe
Expression_system_common: Fission Yeast
Expression_system_taxid: 4896
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pesp-3
symmetry Space Group: C 2 2 21
R_factor 0.221 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.500 293.900 206.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand GSH, LMT enzyme Lyase E.C.4.4.1.20 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L
  • glutathione peroxidase activ...
  • enzyme activator activity


  • Primary referenceCrystal structure of a human membrane protein involved in cysteinyl leukotriene biosynthesis., Ago H, Kanaoka Y, Irikura D, Lam BK, Shimamura T, Austen KF, Miyano M, Nature. 2007 Aug 2;448(7153):609-12. Epub 2007 Jul 15. PMID:17632548
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (304 Kb) [Save to disk]
  • Biological Unit Coordinates (2pno.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (2pno.pdb2.gz) 76 Kb
  • Biological Unit Coordinates (2pno.pdb3.gz) 72 Kb
  • Biological Unit Coordinates (2pno.pdb4.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 2PNO
  • CSU: Contacts of Structural Units for 2PNO
  • Structure Factors (423 Kb)
  • Retrieve 2PNO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PNO from S2C, [Save to disk]
  • Re-refined 2pno structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PNO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PNO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PNO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pno_H] [2pno_D] [2pno_B] [2pno_L] [2pno_A] [2pno_C] [2pno_F] [2pno] [2pno_J] [2pno_G] [2pno_I] [2pno_K] [2pno_E]
  • SWISS-PROT database: [Q16873]
  • Domain organization of [LTC4S_HUMAN] by SWISSPFAM
  • Other resources with information on 2PNO
  • Community annotation for 2PNO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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