2POB	Gene Regulation	date	Apr 26, 2007
title	Ppargamma Ligand Binding Domain Complexed With A Farglitazar Gw4709
authors	R.T.Nolte
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Ligand Binding Domain Synonym: Ppar-Gamma Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.225 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.916 62.006 118.172 90.00 101.94 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	GOL, GW4 BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Co-crystal structure guided array synthesis of PPARgamma inverse agonists., Trump RP, Cobb JE, Shearer BG, Lambert MH, Nolte RT, Willson TM, Buckholz RG, Zhao SM, Leesnitzer LM, Iannone MA, Pearce KH, Billin AN, Hoekstra WJ, Bioorg Med Chem Lett. 2007 Jul 15;17(14):3916-20. Epub 2007 May 18. PMID:17533125

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk] Biological Unit Coordinates (2pob.pdb1.gz) 84 Kb LPC: Ligand-Protein Contacts for 2POB CSU: Contacts of Structural Units for 2POB Likely Quarternary Molecular Structure file(s) for 2POB Structure Factors (222 Kb) Retrieve 2POB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2POB from S2C, [Save to disk] Re-refined 2pob structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2POB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2POB

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2POB, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pob_A] [2pob] [2pob_B] SWISS-PROT database: [P37231] Domain organization of [PPARG_HUMAN] by SWISSPFAM Domain found in 2POB: [HOLI ] by SMART

Other resources with information on 2POB

Community annotation for 2POB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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