2POJ Hydrolase date Apr 26, 2007
title Nmr Solution Structure Of The Inhibitor-Free State Of Macrophage Metalloelastase (Mmp-12)
authors R.Bhaskaran, S.R.Van Doren
compound source
Molecule: Macrophage Metalloelastase
Chain: A
Fragment: Catalytic Domain
Synonym: Hme, Matrix Metalloproteinase-12, Mmp-12, Macrophage Elastase, Me;
Ec: 3.4.24.65
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mmp12, Hme
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 21a
methodSolution NMR
ligand CA, ZN enzyme Hydrolase E.C.3.4.24.65 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of inhibitor-free human metalloelastase (MMP-12) indicates an internal conformational adjustment., Bhaskaran R, Palmier MO, Bagegni NA, Liang X, Van Doren SR, J Mol Biol. 2007 Dec 14;374(5):1333-44. Epub 2007 Oct 16. PMID:17997411
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (981 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2POJ
  • CSU: Contacts of Structural Units for 2POJ
  • Original NMR restraints for 2POJ from PDB
  • Retrieve 2POJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2POJ from S2C, [Save to disk]
  • View 2POJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2POJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2POJ, from MSDmotif at EBI
  • Fold representative 2poj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2poj] [2poj_A]
  • SWISS-PROT database: [P39900]
  • Domain organization of [MMP12_HUMAN] by SWISSPFAM
  • Domain found in 2POJ: [ZnMc ] by SMART
  • Other resources with information on 2POJ
  • Community annotation for 2POJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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