2PQF	Transferase	date	May 02, 2007
title	Human Poly(Adp-Ribose) Polymerase 12, Catalytic Fragment In With An Inhibitor 3-Aminobenzoic Acid
authors	T.Karlberg, L.Lehtio, C.H.Arrowsmith, H.Berglund, R.D.Busam, R.Co L.G.Dahlgren, A.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hamma M.Hogbom, I.Johansson, A.Kallas, T.Kotenyova, M.Moche, P.Nordlun T.Nyman, C.Persson, J.Sagemark, M.Sundstrom, A.G.Thorsell, S.Van Berg, J.Weigelt, L.Holmberg-Schiavone, Structural Genomics Con (Sgc)
compound		source
Molecule: Poly [Adp-Ribose] Polymerase 12 Chain: A, B, C, D, E, F Fragment: Catalytic Fragment Synonym: Parp-12, Zinc Finger Ccch Domain-Containing Protei Ec: 2.4.2.30 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Parp12, Zc3hdc1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Goldprare2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic-Bsa4
symmetry	Space Group: I 4	R_factor 0.198 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 206.590 206.590 84.730 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	CIT, GAB, MSE	enzyme	Transferase E.C.2.4.2.30 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Structural Basis for Lack of ADP-Ribosyltransferase Activity in Poly(ADP-Ribose) Polymerase-13/Zinc Finger Antiviral Protein., Karlberg T, Klepsch M, Thorsell AG, Andersson CD, Linusson A, Schuler H, J Biol Chem. 2015 Jan 29. pii: jbc.M114.630160. PMID:25635049

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk] Biological Unit Coordinates (2pqf.pdb1.gz) 36 Kb Biological Unit Coordinates (2pqf.pdb2.gz) 34 Kb Biological Unit Coordinates (2pqf.pdb3.gz) 35 Kb Biological Unit Coordinates (2pqf.pdb4.gz) 35 Kb Biological Unit Coordinates (2pqf.pdb5.gz) 35 Kb Biological Unit Coordinates (2pqf.pdb6.gz) 35 Kb Biological Unit Coordinates (2pqf.pdb7.gz) 67 Kb Biological Unit Coordinates (2pqf.pdb8.gz) 65 Kb Biological Unit Coordinates (2pqf.pdb9.gz) 68 Kb LPC: Ligand-Protein Contacts for 2PQF CSU: Contacts of Structural Units for 2PQF Likely Quarternary Molecular Structure file(s) for 2PQF Structure Factors (1199 Kb) Retrieve 2PQF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PQF from S2C, [Save to disk] Re-refined 2pqf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PQF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PQF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PQF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pqf_A] [2pqf] [2pqf_C] [2pqf_F] [2pqf_D] [2pqf_E] [2pqf_B] SWISS-PROT database: [Q9H0J9] Domain organization of [PAR12_HUMAN] by SWISSPFAM

Other resources with information on 2PQF

Community annotation for 2PQF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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