2PRR Crystal structure of alkylhydroperoxidase AhpD core: uncharacterized peroxidase-related protein (YP_296737.1) from Ralstonia eutropha JMP134 at 2.15 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand MSE, PEG, PGE enzyme
Gene REUT ; YP
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L
  • peroxidase activity
  • peroxiredoxin activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (393 Kb) [Save to disk]
  • Biological Unit Coordinates (2prr.pdb1.gz) 194 Kb
  • Biological Unit Coordinates (2prr.pdb2.gz) 190 Kb
  • LPC: Ligand-Protein Contacts for 2PRR
  • CSU: Contacts of Structural Units for 2PRR
  • Likely Quarternary Molecular Structure file(s) for 2PRR
  • Structure Factors (8523 Kb)
  • Retrieve 2PRR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PRR from S2C, [Save to disk]
  • Re-refined 2prr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PRR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PRR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PRR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2prr_A] [2prr_D] [2prr_B] [2prr_J] [2prr_F] [2prr_G] [2prr_E] [2prr_L] [2prr_C] [2prr_H] [2prr_K] [2prr_I] [2prr]
  • SWISS-PROT database: [Q46Y90]
  • Domain organization of [Q46Y90_RALEJ] by SWISSPFAM
  • Other resources with information on 2PRR
  • Community annotation for 2PRR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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