2PTF Structural Genomics, Unknown Function date May 08, 2007
title Crystal Structure Of Protein Mth_863 From Methanobacterium Thermoautotrophicum Bound To Fmn
authors J.B.Bonanno, M.Rutter, K.T.Bain, M.Iizuka, S.Ozyurt, D.Smith, S.Wa J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound source
Molecule: Uncharacterized Protein Mth_863
Chain: A, B
Engineered: Yes
 Organism_scientific: Methanothermobacter Thermautotrophicus
Organism_taxid: 187420
Strain: Delta H
Gene: Mth_863
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
Expression_system_plasmid: Modified Pet26
symmetry Space Group: P 41 21 2
R_factor 0.199 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.727 91.727 117.868 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand FMN enzyme
Gene MTH
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (2ptf.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 2PTF
  • CSU: Contacts of Structural Units for 2PTF
  • Likely Quarternary Molecular Structure file(s) for 2PTF
  • Structure Factors (163 Kb)
  • Retrieve 2PTF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PTF from S2C, [Save to disk]
  • Re-refined 2ptf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2PTF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2PTF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PTF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ptf_A] [2ptf_B] [2ptf]
  • SWISS-PROT database: [O26951]
  • Domain organization of [Y863_METTH] by SWISSPFAM
    • Other resources with information on 2PTF
  • Community annotation for 2PTF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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