2PUY Transcription date May 09, 2007
title Crystal Structure Of The Bhc80 Phd Finger
authors J.R.Horton, X.Cheng, R.E.Collins
compound source
Molecule: Phd Finger Protein 21a
Chain: A, B
Fragment: Phd Finger Residues: 486-543
Synonym: Braf35-Hdac Complex Protein Bhc80, Bhc80a
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Phf21a, Bhc80, Kiaa1696
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b

Molecule: Histone H3
Chain: E
Fragment: H3 1-10
Engineered: Yes

Synthetic: Yes
Other_details: Synthesized Peptide
symmetry Space Group: C 1 2 1
R_factor 0.206 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.511 25.386 62.282 90.00 96.93 90.00
method X-Ray Diffractionresolution 1.43 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRecognition of unmethylated histone H3 lysine 4 links BHC80 to LSD1-mediated gene repression., Lan F, Collins RE, De Cegli R, Alpatov R, Horton JR, Shi X, Gozani O, Cheng X, Shi Y, Nature. 2007 Aug 9;448(7154):718-22. PMID:17687328
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (2puy.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 2PUY
  • CSU: Contacts of Structural Units for 2PUY
  • Likely Quarternary Molecular Structure file(s) for 2PUY
  • Retrieve 2PUY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PUY from S2C, [Save to disk]
  • View 2PUY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PUY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2PUY, from MSDmotif at EBI
  • Fold representative 2puy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2puy_E] [2puy_B] [2puy_A] [2puy]
  • SWISS-PROT database: [Q96BD5]
  • Domain organization of [PF21A_HUMAN] by SWISSPFAM
  • Domains found in 2PUY: [PHD] [RING ] by SMART
  • Other resources with information on 2PUY
  • Community annotation for 2PUY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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