2PVY Transferase date May 10, 2007
title Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Ha The Pathogenic K659n Mutation Responsible For An Unclassifi Craniosynostosis Syndrome.
authors H.Chen, M.Mohammadi
compound source
Molecule: Fibroblast Growth Factor Receptor 2
Chain: A, B, C, D
Fragment: Kinase Domain
Synonym: Fgfr-2, Keratinocyte Growth Factor Receptor 2, Cd3 Antigen;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgfr2, Bek, Ksam
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plys-S
symmetry Space Group: P 1
R_factor 0.236 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.581 70.467 85.690 92.19 112.31 116.19
method X-Ray Diffractionresolution 2.20 Å
ligand ACP, SO4 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA molecular brake in the kinase hinge region regulates the activity of receptor tyrosine kinases., Chen H, Ma J, Li W, Eliseenkova AV, Xu C, Neubert TA, Miller WT, Mohammadi M, Mol Cell. 2007 Sep 7;27(5):717-30. PMID:17803937
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (192 Kb) [Save to disk]
  • Biological Unit Coordinates (2pvy.pdb1.gz) 185 Kb
  • LPC: Ligand-Protein Contacts for 2PVY
  • CSU: Contacts of Structural Units for 2PVY
  • Likely Quarternary Molecular Structure file(s) for 2PVY
  • Structure Factors (955 Kb)
  • Retrieve 2PVY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PVY from S2C, [Save to disk]
  • Re-refined 2pvy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PVY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PVY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PVY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pvy_D] [2pvy_B] [2pvy_C] [2pvy_A] [2pvy]
  • SWISS-PROT database: [P21802]
  • Domain organization of [FGFR2_HUMAN] by SWISSPFAM
  • Domain found in 2PVY: [TyrKc ] by SMART
  • Other resources with information on 2PVY
  • Community annotation for 2PVY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science