2Q06 Viral Protein, Rna Binding Protein date May 21, 2007
title Crystal Structure Of Influenza A Virus H5n1 Nucleoprotein
authors A.K.L.Ng, H.Zhang, K.Tan, J.Wang, P.C.Shaw
compound source
Molecule: Nucleoprotein
Chain: A, B
Engineered: Yes
 Organism_scientific: Influenza A Virus
Organism_common: Virus
Organism_taxid: 11320
Strain: H5n1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
symmetry Space Group: P 21 3
R_factor 0.202 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
153.578 153.578 153.578 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the influenza virus A H5N1 nucleoprotein: implications for RNA binding, oligomerization, and vaccine design., Ng AK, Zhang H, Tan K, Li Z, Liu JH, Chan PK, Li SM, Chan WY, Au SW, Joachimiak A, Walz T, Wang JH, Shaw PC, FASEB J. 2008 Oct;22(10):3638-47. Epub 2008 Jul 9. PMID:18614582
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (2q06.pdb1.gz) 215 Kb
  • Biological Unit Coordinates (2q06.pdb2.gz) 213 Kb
  • CSU: Contacts of Structural Units for 2Q06
  • Likely Quarternary Molecular Structure file(s) for 2Q06
  • Structure Factors (153 Kb)
  • Retrieve 2Q06 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q06 from S2C, [Save to disk]
  • Re-refined 2q06 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2Q06 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2Q06
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Q06, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q06] [2q06_B] [2q06_A]
  • SWISS-PROT database: [Q9PX50]
  • Domain organization of [Q9PX50_9INFA] by SWISSPFAM
    • Other resources with information on 2Q06
  • Community annotation for 2Q06 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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