2Q1L Oxidoreductase date May 24, 2007
title Design And Synthesis Of Pyrrole-Based, Hepatoselective Hmg-C Reductase Inhibitors
authors A.Pavlovsky, J.A.Pfefferkorn, M.S.Harris, B.C.Finzel
compound source
Molecule: 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase
Chain: A, B, C, D
Fragment: Catalytic Domain (Residues 441-875)
Synonym: Hmg-Coa Reductase
Ec: 1.1.1.34
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hmgcr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star
symmetry Space Group: P 1 21 1
R_factor 0.223 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.732 176.958 76.735 90.00 118.83 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand 882 BindingDB enzyme Oxidoreductase E.C.1.1.1.34 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDesign and synthesis of hepatoselective, pyrrole-based HMG-CoA reductase inhibitors., Pfefferkorn JA, Song Y, Sun KL, Miller SR, Trivedi BK, Choi C, Sorenson RJ, Bratton LD, Unangst PC, Larsen SD, Poel TJ, Cheng XM, Lee C, Erasga N, Auerbach B, Askew V, Dillon L, Hanselman JC, Lin Z, Lu G, Robertson A, Olsen K, Mertz T, Sekerke C, Pavlovsky A, Harris MS, Bainbridge G, Caspers N, Chen H, Eberstadt M, Bioorg Med Chem Lett. 2007 Jun 6;. PMID:17574412
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (251 Kb) [Save to disk]
  • Biological Unit Coordinates (2q1l.pdb1.gz) 244 Kb
  • LPC: Ligand-Protein Contacts for 2Q1L
  • CSU: Contacts of Structural Units for 2Q1L
  • Likely Quarternary Molecular Structure file(s) for 2Q1L
  • Structure Factors (793 Kb)
  • Retrieve 2Q1L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q1L from S2C, [Save to disk]
  • Re-refined 2q1l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Q1L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Q1L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Q1L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q1l_A] [2q1l_B] [2q1l] [2q1l_D] [2q1l_C]
  • SWISS-PROT database: [P04035]
  • Belongs to the resistance-nodulation-cell division (rnd) superfamily according to TCDB.
  • Domain organization of [HMDH_HUMAN] by SWISSPFAM
  • Other resources with information on 2Q1L
  • Community annotation for 2Q1L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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