2Q2F Membrane Protein date May 28, 2007
title Structure Of The Human Selenoprotein S (Vcp-Interacting Memb Protein)
authors J.R.Walker, R.Paramanathan, C.Butler-Cole, J.Weigelt, M.Sundstro C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Struct Genomics Consortium (Sgc)
compound source
Molecule: Selenoprotein S
Chain: A
Fragment: Coiled-Coil Domain, Residues 52-122
Synonym: Vcp-Interacting Membrane Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sels, Vimp, Ad-015, Sbbi8
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Lic
symmetry Space Group: C 1 2 1
R_factor 0.181 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.666 18.705 37.992 90.00 93.36 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CL, GOL, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (2q2f.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2Q2F
  • CSU: Contacts of Structural Units for 2Q2F
  • Likely Quarternary Molecular Structure file(s) for 2Q2F
  • Structure Factors (199 Kb)
  • Retrieve 2Q2F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q2F from S2C, [Save to disk]
  • Re-refined 2q2f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2Q2F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2Q2F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Q2F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q2f] [2q2f_A]
  • SWISS-PROT database: [Q9BQE4]
  • Domain organization of [SELS_HUMAN] by SWISSPFAM
    • Other resources with information on 2Q2F
  • Community annotation for 2Q2F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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