2Q3H Structural Genomics date May 30, 2007
title The Crystal Structure Of Rhoua In The Gdp-Bound State.
authors C.Gileadi, X.Yang, E.Papagrigoriou, J.Elkins, Y.Zhao, J.Bray, O.Gi C.Umeano, E.Ugochukwu, J.Uppenberg, G.Bunkoczi, F.Von Delft, A.C C.Phillips, P.Savitsky, O.Fedorov, A.Edwards, J.Weigelt, C.H.Arr M.Sundstrom, D.A.Doyle, Structural Genomics Consortium (Sgc)
compound source
Molecule: Ras Homolog Gene Family, Member U
Chain: A
Synonym: Ras-Like Gene Family Member U, Wrch-1, Ryu Gtpase, Like Gtpase, Rho Gtpase-Like Protein Arhu, Gtp-Binding Prot 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rhou
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) With With Prare Plasmid Rare Codon Trnas,(Chloramphenicol-Resistant);
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: C 1 2 1
R_factor 0.183 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.068 53.600 54.128 90.00 118.80 90.00
method X-Ray Diffractionresolution 1.73 Å
ligand GDP, MG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (2q3h.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2Q3H
  • CSU: Contacts of Structural Units for 2Q3H
  • Likely Quarternary Molecular Structure file(s) for 2Q3H
  • Structure Factors (304 Kb)
  • Retrieve 2Q3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q3H from S2C, [Save to disk]
  • Re-refined 2q3h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Q3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Q3H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Q3H, from MSDmotif at EBI
  • Fold representative 2q3h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q3h_A] [2q3h]
  • SWISS-PROT database: [Q7L0Q8]
  • Domain organization of [RHOU_HUMAN] by SWISSPFAM
  • Domain found in 2Q3H: [RHO ] by SMART
  • Other resources with information on 2Q3H
  • Community annotation for 2Q3H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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