2Q7M Membrane Protein, Lipid Transport date Jun 07, 2007
title Crystal Structure Of Human Flap With Mk-591
authors A.D.Ferguson
compound source
Molecule: Arachidonate 5-Lipoxygenase-Activating Protein
Chain: A, B, C, D, E, F
Synonym: Flap, Mk-886-Binding Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alox5ap, Flap
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 4 21 2
R_factor 0.242 R_Free 0.283
length a length b length c angle alpha angle beta angle gamma
180.600 180.600 140.570 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.25 Å
ligand 2CS BindingDB enzyme
F, A, D, C, E, B
  • glutathione peroxidase activ...
  • enzyme activator activity

  • Primary referenceCrystal structure of inhibitor-bound human 5-lipoxygenase-activating protein., Ferguson AD, McKeever BM, Xu S, Wisniewski D, Miller DK, Yamin TT, Spencer RH, Chu L, Ujjainwalla F, Cunningham BR, Evans JF, Becker JW, Science. 2007 Jul 27;317(5837):510-2. Epub 2007 Jun 28. PMID:17600184
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (2q7m.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (2q7m.pdb2.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 2Q7M
  • CSU: Contacts of Structural Units for 2Q7M
  • Likely Quarternary Molecular Structure file(s) for 2Q7M
  • Structure Factors (351 Kb)
  • Retrieve 2Q7M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q7M from S2C, [Save to disk]
  • Re-refined 2q7m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Q7M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Q7M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Q7M, from MSDmotif at EBI
  • Fold representative 2q7m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q7m_E] [2q7m] [2q7m_F] [2q7m_D] [2q7m_A] [2q7m_B] [2q7m_C]
  • SWISS-PROT database: [P20292]
  • Domain organization of [AL5AP_HUMAN] by SWISSPFAM
  • Other resources with information on 2Q7M
  • Community annotation for 2Q7M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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