2Q8J Metal Binding Protein date Jun 11, 2007
title Crystal Structure Of The Complex Of C-Lobe Of Bovine Lactofe Mannitol And Mannose At 2.7 A Resolution
authors R.Mir, R.Jain, M.Sinha, N.Singh, S.Sharma, P.Kaur, A.Bhushan, T.P.S
compound source
Molecule: Lactotransferrin
Chain: A
Fragment: C-Lobe
Synonym: Lactoferrin
Ec: 3.4.21.-
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Other_details: Milk Protein
symmetry Space Group: P 1 21 1
R_factor 0.195 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.400 50.300 65.900 90.00 107.80 90.00
method X-Ray Diffractionresolution 2.71 Å
ligand BMA, CO3, FE, M2P, MAN, NAG, SO4, ZN enzyme Hydrolase E.C.3.4.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2q8j.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 2Q8J
  • CSU: Contacts of Structural Units for 2Q8J
  • Likely Quarternary Molecular Structure file(s) for 2Q8J
  • Structure Factors (79 Kb)
  • Retrieve 2Q8J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q8J from S2C, [Save to disk]
  • Re-refined 2q8j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Q8J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Q8J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Q8J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q8j] [2q8j_A]
  • SWISS-PROT database: [P24627]
  • Domain organization of [TRFL_BOVIN] by SWISSPFAM
  • Domain found in 2Q8J: [TR_FER ] by SMART
  • Other resources with information on 2Q8J
  • Community annotation for 2Q8J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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