2Q8R Cytokine date Jun 11, 2007
title Structural And Functional Characterization Of Cc Chemokine C
authors K.Y.Blain
compound source
Molecule: Ccl14
Chain: E, F, G, H
Fragment: Sequence Database Residues 28-93
Synonym: Small Inducible Cytokine A14, Chemokine Cc-1cc-3, 1hcc-3, Hcc-1(1-74), Ncc-2
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.139 57.553 85.442 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.82 Å
Gene
Ontology
ChainFunctionProcessComponent
H, F, G, E


Primary referenceStructural and Functional Characterization of CC Chemokine CCL14(,)., Blain KY, Kwiatkowski W, Zhao Q, Fleur DL, Naik C, Chun TW, Tsareva T, Kanakaraj P, Laird MW, Shah R, George L, Sanyal I, Moore PA, Demeler B, Choe S, Biochemistry. 2007 Sep 4;46(35):10008-10015. Epub 2007 Aug 11. PMID:17691823
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (2q8r.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (2q8r.pdb2.gz) 25 Kb
  • CSU: Contacts of Structural Units for 2Q8R
  • Likely Quarternary Molecular Structure file(s) for 2Q8R
  • Structure Factors (181 Kb)
  • Retrieve 2Q8R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q8R from S2C, [Save to disk]
  • Re-refined 2q8r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2Q8R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2Q8R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Q8R, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q8r_H] [2q8r_F] [2q8r_E] [2q8r_G] [2q8r]
  • SWISS-PROT database: [Q16627]
  • Domain organization of [CCL14_HUMAN] by SWISSPFAM
  • Domain found in 2Q8R: [SCY ] by SMART
    • Other resources with information on 2Q8R
  • Community annotation for 2Q8R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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