2QB1 Hydrolase Regulator date Jun 15, 2007
title 2tel Crystallization Module
authors S.Nauli, J.U.Bowie
compound source
Molecule: E80-Telsam Domain
Chain: A, B
Engineered: Yes
Organism_scientific: Escherichia Coli
Expression_system: Escherichia Coli
symmetry Space Group: P 31
R_factor 0.211 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.686 65.686 36.144 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.61 Å
Primary referencePolymer-driven crystallization., Nauli S, Farr S, Lee YJ, Kim HY, Faham S, Bowie JU, Protein Sci. 2007 Nov;16(11):2542-51. PMID:17962407
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (2qb1.pdb1.gz) 14 Kb
  • Biological Unit Coordinates (2qb1.pdb2.gz) 14 Kb
  • CSU: Contacts of Structural Units for 2QB1
  • Likely Quarternary Molecular Structure file(s) for 2QB1
  • Structure Factors (35 Kb)
  • Retrieve 2QB1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QB1 from S2C, [Save to disk]
  • Re-refined 2qb1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2QB1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QB1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2QB1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s2qb1, region B:3-289,B:402-496 [Jmol] [rasmolscript] [script source]
  • Fold representative 2qb1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qb1_A] [2qb1] [2qb1_B]
  • SWISS-PROT database: [P41212]
  • Domain organization of [ETV6_HUMAN] by SWISSPFAM
  • Domain found in 2QB1: [SAM_PNT ] by SMART
  • Alignments of the sequence of 2QB1 with the sequences similar proteins can be viewed for 2QB1's classification [ETV6_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ETV6_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2QB1
  • Community annotation for 2QB1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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