2QBW Unknown Function date Jun 18, 2007
title The Crystal Structure Of Pdz-Fibronectin Fusion Protein
authors J.Huang, K.Makabe, A.Koide, S.Koide
compound source
Molecule: Pdz-Fibronectin Fusion Protein
Chain: A
Synonym: Erbb2-Interacting Protein, Erbin, Densin-180-Like
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Erbb2ip
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet System

Molecule: Polypeptide
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: Chemically Synthesized
symmetry Space Group: I 21 21 21
R_factor 0.168 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.818 79.350 119.842 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign of protein function leaps by directed domain interface evolution., Huang J, Koide A, Makabe K, Koide S, Proc Natl Acad Sci U S A. 2008 May 6;105(18):6578-83. Epub 2008 Apr 29. PMID:18445649
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (2qbw.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 2QBW
  • Likely Quarternary Molecular Structure file(s) for 2QBW
  • Structure Factors (191 Kb)
  • Retrieve 2QBW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QBW from S2C, [Save to disk]
  • Re-refined 2qbw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2QBW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QBW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QBW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qbw] [2qbw_B] [2qbw_A]
  • SWISS-PROT database: [Q96RT1]
  • Domain organization of [LAP2_HUMAN] by SWISSPFAM
  • Domains found in 2QBW: [FN3] [PDZ ] by SMART
  • Other resources with information on 2QBW
  • Community annotation for 2QBW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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