2QC7 Chaperone date Jun 19, 2007
title Crystal Structure Of The Protein-Disulfide Isomerase Related Erp29
authors N.N.Barak, M.Sevvana, P.Neumann, M.Malesevic, K.Naumann, G.Fische G.M.Sheldrick, M.T.Stubbs, D.M.Ferrari
compound source
Molecule: Endoplasmic Reticulum Protein Erp29
Chain: A, B
Synonym: Erp31, Erp28
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Erp29, C12orf8, Erp28
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe60
symmetry Space Group: P 1 2 1
R_factor 0.265 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.044 68.025 70.088 90.00 107.46 90.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure and functional analysis of the protein disulfide isomerase-related protein ERp29., Barak NN, Neumann P, Sevvana M, Schutkowski M, Naumann K, Malesevic M, Reichardt H, Fischer G, Stubbs MT, Ferrari DM, J Mol Biol. 2009 Feb 6;385(5):1630-42. Epub 2008 Dec 3. PMID:19084538
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (2qc7.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (2qc7.pdb2.gz) 70 Kb
  • CSU: Contacts of Structural Units for 2QC7
  • Likely Quarternary Molecular Structure file(s) for 2QC7
  • Structure Factors (85 Kb)
  • Retrieve 2QC7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QC7 from S2C, [Save to disk]
  • Re-refined 2qc7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2QC7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QC7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2QC7, from MSDmotif at EBI
  • Fold representative 2qc7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qc7_A] [2qc7] [2qc7_B]
  • SWISS-PROT database: [P30040]
  • Domain organization of [ERP29_HUMAN] by SWISSPFAM
  • Other resources with information on 2QC7
  • Community annotation for 2QC7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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