2QEE Hydrolase date Jun 25, 2007
title Crystal Structure Of Putative Amidohydrolase Bh0493 From Bac Halodurans C-125
authors V.N.Malashkevich, R.Toro, S.Wasserman, J.M.Sauder, S.K.Burley, S. New York Sgx Research Center For Structural Genomics (Nysgx
compound source
Molecule: Bh0493 Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Engineered: Yes
 Organism_scientific: Bacillus Halodurans C-125
Organism_taxid: 272558
Strain: C-125, Dsm 18197, Ferm 7344, Jcm 9153
Atcc: Baa-125
Gene: Bh0493
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1
R_factor 0.187 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.995 122.208 127.582 78.85 78.95 80.92
method X-Ray Diffractionresolution 1.65 Å
ligand CL, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (917 Kb) [Save to disk]
  • Biological Unit Coordinates (2qee.pdb1.gz) 236 Kb
  • Biological Unit Coordinates (2qee.pdb2.gz) 237 Kb
  • Biological Unit Coordinates (2qee.pdb3.gz) 233 Kb
  • Biological Unit Coordinates (2qee.pdb4.gz) 230 Kb
  • LPC: Ligand-Protein Contacts for 2QEE
  • CSU: Contacts of Structural Units for 2QEE
  • Likely Quarternary Molecular Structure file(s) for 2QEE
  • Structure Factors (6620 Kb)
  • Retrieve 2QEE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QEE from S2C, [Save to disk]
  • Re-refined 2qee structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2QEE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2QEE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QEE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qee_A] [2qee_G] [2qee_J] [2qee_B] [2qee_F] [2qee_H] [2qee_I] [2qee_D] [2qee_L] [2qee] [2qee_K] [2qee_E] [2qee_C]
  • SWISS-PROT database: [Q9KFI6]
  • Domain organization of [Q9KFI6_BACHD] by SWISSPFAM
    • Other resources with information on 2QEE
  • Community annotation for 2QEE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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