2QF1	Lyase	date	Jun 26, 2007
title	Rat Cytosolic Pepck In Complex With Oxaloacetic Acid.
authors	S.M.Sullivan, T.Holyoak
compound		source
Molecule: Phosphoenolpyruvate Carboxykinase, Cytosolic [Gtp Chain: A Synonym: Phosphoenolpyruvate Carboxylase, Pepck-C Ec: 4.1.1.32 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Pck1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t2
symmetry	Space Group: P 1 21 1	R_factor 0.194 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.218 119.340 60.808 90.00 108.71 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	MN, NA, OAA	enzyme	Lyase E.C.4.1.1.32 BRENDA
Gene Ontology	Chain Function Process Component A nucleoside diphosphate kinas...
Primary reference	Structures of Rat Cytosolic PEPCK: Insight into the Mechanism of Phosphorylation and Decarboxylation of Oxaloacetic Acid(,)., Sullivan SM, Holyoak T, Biochemistry. 2007 Aug 9;. PMID:17685635

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk] Biological Unit Coordinates (2qf1.pdb1.gz) 105 Kb LPC: Ligand-Protein Contacts for 2QF1 CSU: Contacts of Structural Units for 2QF1 Likely Quarternary Molecular Structure file(s) for 2QF1 Structure Factors (392 Kb) Retrieve 2QF1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2QF1 from S2C, [Save to disk] Re-refined 2qf1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2QF1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2QF1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2QF1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2qf1] [2qf1_A] SWISS-PROT database: [P07379] Domain organization of [PCKGC_RAT] by SWISSPFAM

Other resources with information on 2QF1

Community annotation for 2QF1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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