2QGE Hormone Growth Factor date Jun 28, 2007
title Human Transthyretin (Ttr) Complexed With 2-(3,5-Dimethylphen Benzoxazole
authors S.Connelly, I.A.Wilson
compound source
Molecule: Transthyretin
Chain: A, B
Synonym: Prealbumin, Tbpa, Ttr, Attr
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ttr, Palb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Epicurean Gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmmha
symmetry Space Group: P 21 21 2
R_factor 0.164 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.917 85.777 64.563 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand MR6 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • hormone activity


    • Primary referenceBiochemical and structural evaluation of highly selective 2-arylbenzoxazole-based transthyretin amyloidogenesis inhibitors., Johnson SM, Connelly S, Wilson IA, Kelly JW, J Med Chem. 2008 Jan 24;51(2):260-70. Epub 2007 Dec 21. PMID:18095641
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (2qge.pdb1.gz) 163 Kb
  • LPC: Ligand-Protein Contacts for 2QGE
  • CSU: Contacts of Structural Units for 2QGE
  • Likely Quarternary Molecular Structure file(s) for 2QGE
  • Structure Factors (297 Kb)
  • Retrieve 2QGE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QGE from S2C, [Save to disk]
  • Re-refined 2qge structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2QGE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2QGE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QGE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qge_A] [2qge_B] [2qge]
  • SWISS-PROT database: [P02766]
  • Domain organization of [TTHY_HUMAN] by SWISSPFAM
  • Domain found in 2QGE: [TR_THY ] by SMART
    • Other resources with information on 2QGE
  • Community annotation for 2QGE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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