2QPW	Transcription	date	Jul 25, 2007
title	Methyltransferase Domain Of Human Pr Domain-Containing Prote
authors	V.V.Lunin, H.Wu, L.Dombrovski, T.Antoshenko, P.Loppnau, J.Weigelt M.Sundstrom, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, J.Min, A.N.Plotnikov, Structural Genomics Consortium (Sgc)
compound		source
Molecule: Pr Domain Zinc Finger Protein 2 Chain: A Fragment: Methyltransferase Domain: Residues 2-148 Synonym: Pr Domain-Containing Protein 2, Retinoblastoma Pro Interacting Zinc Finger Protein, Zinc Finger Protein Riz, M Protein, Mtb-Zf, Gata-3-Binding Protein G3b; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Prdm2, Riz Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5a Expression_system_vector_type: Plasmid Expression_system_plasmid: P15mhl
symmetry	Space Group: P 21 21 21	R_factor 0.168 R_Free 0.222
crystal cell	length a length b length c angle alpha angle beta angle gamma 36.462 51.196 70.887 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.79 Å
Primary reference	Structural biology of human H3K9 methyltransferases., Wu H, Min J, Lunin VV, Antoshenko T, Dombrovski L, Zeng H, Allali-Hassani A, Campagna-Slater V, Vedadi M, Arrowsmith CH, Plotnikov AN, Schapira M, PLoS One. 2010 Jan 11;5(1):e8570. PMID:20084102

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk] Biological Unit Coordinates (2qpw.pdb1.gz) 27 Kb CSU: Contacts of Structural Units for 2QPW Likely Quarternary Molecular Structure file(s) for 2QPW Structure Factors (89 Kb) Retrieve 2QPW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2QPW from S2C, [Save to disk] Re-refined 2qpw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2QPW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2QPW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2QPW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2qpw_A] [2qpw] SWISS-PROT database: [Q13029] Domain organization of [PRDM2_HUMAN] by SWISSPFAM Domain found in 2QPW: [SET ] by SMART

Other resources with information on 2QPW

Community annotation for 2QPW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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