2QQJ	Signaling Protein	date	Jul 26, 2007
title	Crystal Structure Of The B1b2 Domains From Human Neuropilin-
authors	B.A.Appleton, C.Wiesmann
compound		source
Molecule: Neuropilin-2 Chain: A Fragment: F58 Type C 1 And C 2 Domains Synonym: Vascular Endothelial Cell Growth Factor 165 Recept Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nrp2, Vegf165r2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 21 21	R_factor 0.172 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 36.456 70.501 121.929 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural studies of neuropilin/antibody complexes provide insights into semaphorin and VEGF binding., Appleton BA, Wu P, Maloney J, Yin J, Liang WC, Stawicki S, Mortara K, Bowman KK, Elliott JM, Desmarais W, Bazan JF, Bagri A, Tessier-Lavigne M, Koch AW, Wu Y, Watts RJ, Wiesmann C, EMBO J. 2007 Nov 8;. PMID:17989695

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (2qqj.pdb1.gz) 55 Kb LPC: Ligand-Protein Contacts for 2QQJ CSU: Contacts of Structural Units for 2QQJ Likely Quarternary Molecular Structure file(s) for 2QQJ Structure Factors (173 Kb) Retrieve 2QQJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2QQJ from S2C, [Save to disk] Re-refined 2qqj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2QQJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2QQJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2QQJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2qqj_A] [2qqj] SWISS-PROT database: [O60462] Domain organization of [NRP2_HUMAN] by SWISSPFAM Domain found in 2QQJ: [FA58C ] by SMART

Other resources with information on 2QQJ

Community annotation for 2QQJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---