2QVF Cell Adhesion date Aug 08, 2007
title Mouse E-Cadherin Domains 1,2
authors K.J.Carroll
compound source
Molecule: Epithelial-Cadherin (E-Cadherin) (Uvomorulin) (Ca (Arc-1) (Cd324 Antigen);
Chain: B
Fragment: Cadherin 1, Cadherin 2, Unp Residues 157-369
 Organism_scientific: Mus Musculus
Organism_common: Mouse
symmetry Space Group: C 1 2 1
R_factor 0.230 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.711 42.669 58.132 90.00 111.97 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (2qvf.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 2QVF
  • CSU: Contacts of Structural Units for 2QVF
  • Likely Quarternary Molecular Structure file(s) for 2QVF
  • Structure Factors (97 Kb)
  • Retrieve 2QVF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QVF from S2C, [Save to disk]
  • Re-refined 2qvf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2QVF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2QVF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QVF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qvf] [2qvf_B]
  • SWISS-PROT database: [P09803]
  • Domain organization of [CADH1_MOUSE] by SWISSPFAM
  • Domain found in 2QVF: [CA ] by SMART
    • Other resources with information on 2QVF
  • Community annotation for 2QVF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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