2QW4 Hormone Receptor date Aug 09, 2007
title Human Nr4a1 Ligand-Binding Domain
authors J.R.Min, A.Schuetz, P.Loppnau, J.Weigelt, M.Sundstrom, C.H.Arrows A.M.Edwards, A.Bochkarev, A.N.Plotnikov, Structural Genomics C (Sgc)
compound source
Molecule: Orphan Nuclear Receptor Nr4a1
Chain: A, B, C, D
Synonym: Orphan Nuclear Receptor Hmr, Early Response Protei Tr3 Orphan Receptor, St-59;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr4a1, Gfrp1, Hmr, Nak1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.230 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.530 96.364 144.849 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
note 2QW4 supersedes 2GBD
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (2qw4.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (2qw4.pdb2.gz) 37 Kb
  • Biological Unit Coordinates (2qw4.pdb3.gz) 37 Kb
  • Biological Unit Coordinates (2qw4.pdb4.gz) 37 Kb
  • CSU: Contacts of Structural Units for 2QW4
  • Likely Quarternary Molecular Structure file(s) for 2QW4
  • Structure Factors (474 Kb)
  • Retrieve 2QW4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QW4 from S2C, [Save to disk]
  • Re-refined 2qw4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2QW4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QW4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2QW4, from MSDmotif at EBI
  • Fold representative 2qw4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qw4_D] [2qw4] [2qw4_C] [2qw4_B] [2qw4_A]
  • SWISS-PROT database: [P22736]
  • Domain organization of [NR4A1_HUMAN] by SWISSPFAM
  • Domain found in 2QW4: [HOLI ] by SMART
  • Other resources with information on 2QW4
  • Community annotation for 2QW4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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