2R02	Apoptosis	date	Aug 17, 2007
title	Crystal Structure Of Alixaip1 In Complex With The Hiv-1 Ypl Domain
authors	C.P.Hill, Q.Zhai, R.D.Fisher
compound		source
Molecule: Programmed Cell Death 6-Interacting Protein Chain: A Fragment: Alix Bro1-V Domains Synonym: Pdcd6-Interacting Protein, Alg-2-Interacting Prote Hp95; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdcd6ip, Aip1, Alix, Kiaa1375 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Codon+ Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet151d-Topo
Molecule: P6-Gag Chain: B Fragment: Unp Residues 479-489 Engineered: Yes		Synthetic: Yes Other_details: The Sequence Of This Peptide Naturally Exist Human Immunodeficiency Virus Type 1(Hiv-1).
symmetry	Space Group: C 1 2 1	R_factor 0.224 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 145.923 99.078 73.226 90.00 107.32 90.00
method	X-Ray Diffraction	resolution	2.60 Å
Primary reference	Structural and functional studies of ALIX interactions with YPX(n)L late domains of HIV-1 and EIAV., Zhai Q, Fisher RD, Chung HY, Myszka DG, Sundquist WI, Hill CP, Nat Struct Mol Biol. 2008 Jan;15(1):43-9. Epub 2007 Dec 9. PMID:18066081

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk] Biological Unit Coordinates (2r02.pdb1.gz) 234 Kb CSU: Contacts of Structural Units for 2R02 Likely Quarternary Molecular Structure file(s) for 2R02 Structure Factors (249 Kb) Retrieve 2R02 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2R02 from S2C, [Save to disk] Re-refined 2r02 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2R02 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2R02

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2R02, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2r02_B] [2r02_A] [2r02] SWISS-PROT database: [Q9WC62] [Q8WUM4] Domain organization of [GAG_HV1S9] [PDC6I_HUMAN] by SWISSPFAM Domain found in 2R02: [BRO1 ] by SMART

Other resources with information on 2R02

Community annotation for 2R02 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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