2R0B Hydrolase date Aug 18, 2007
title Crystal Structure Of Human Tyrosine Phosphatase-Like Serinethreoninetyrosine-Interacting Protein
authors J.B.Bonanno, J.Freeman, K.T.Bain, M.Iizuka, R.Romero, D.Smith, S.W J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound source
Molecule: Serinethreoninetyrosine-Interacting Protein
Chain: A
Fragment: Residues 26-177
Synonym: Protein Tyrosine Phosphatase-Like Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Styx
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
Expression_system_plasmid: Modified Pet26
symmetry Space Group: P 21 21 21
R_factor 0.260 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.932 53.358 60.479 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural genomics of protein phosphatases., Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley SK, J Struct Funct Genomics. 2007 Sep;8(2-3):121-40. Epub 2007 Dec 5. PMID:18058037
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (2r0b.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 2R0B
  • CSU: Contacts of Structural Units for 2R0B
  • Likely Quarternary Molecular Structure file(s) for 2R0B
  • Structure Factors (158 Kb)
  • Retrieve 2R0B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R0B from S2C, [Save to disk]
  • Re-refined 2r0b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2R0B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2R0B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2R0B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r0b_A] [2r0b]
  • SWISS-PROT database: [Q8WUJ0]
  • Domain organization of [STYX_HUMAN] by SWISSPFAM
  • Domain found in 2R0B: [DSPc ] by SMART
  • Other resources with information on 2R0B
  • Community annotation for 2R0B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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