2R0L	Hydrolase, Immune System	date	Aug 20, 2007
title	Short Form Hgfa With Inhibitory Fab75
authors	C.Eigenbrot, S.Shia
compound		source
Molecule: Antibody Light Chain Chain: L Engineered: Yes		Organism_scientific: Homo Sapiens, Synthetic Construct Organism_taxid: 9606, 32630 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Other_details: The Protein Was Made Using A Synthetically Diversified Gene Library And Selected For Tight Binding To Specific Target On A Plastic Surface. The Gene Library Used Human Genes As Its Basis;
Molecule: Antibody Heavy Chain, Fab Portion Only Chain: H Engineered: Yes		Organism_scientific: Homo Sapiens, Synthetic Construct Organism_taxid: 9606, 32630 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Other_details: The Protein Was Made Using A Synthetically Diversified Gene Library And Selected For Tight Binding To Specific Target On A Plastic Surface. The Gene Library Used Human Genes As Its Basis;
Molecule: Hepatocyte Growth Factor Activator Chain: A Fragment: Short Form Hgfa Ec: 3.4.21.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hgfac Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Virus
Molecule: Hepatocyte Growth Factor Activator Chain: B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hgfac Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Virus
symmetry	Space Group: P 1	R_factor 0.193 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 38.820 48.230 97.050 98.39 96.24 100.77
method	X-Ray Diffraction	resolution	2.20 Å
ligand	BMA, NAG	enzyme	Hydrolase E.C.3.4.21 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural insight into distinct mechanisms of protease inhibition by antibodies., Wu Y, Eigenbrot C, Liang WC, Stawicki S, Shia S, Fan B, Ganesan R, Lipari MT, Kirchhofer D, Proc Natl Acad Sci U S A. 2007 Dec 11;104(50):19784-9. Epub 2007 Dec 5. PMID:18077410

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk] Biological Unit Coordinates (2r0l.pdb1.gz) 109 Kb LPC: Ligand-Protein Contacts for 2R0L CSU: Contacts of Structural Units for 2R0L Likely Quarternary Molecular Structure file(s) for 2R0L Structure Factors (513 Kb) Retrieve 2R0L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2R0L from S2C, [Save to disk] Re-refined 2r0l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2R0L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2R0L

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2R0L, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2r0l_A] [2r0l_H] [2r0l] [2r0l_B] [2r0l_L] SWISS-PROT database: [Q04756] Domain organization of [HGFA_HUMAN] by SWISSPFAM Domains found in 2R0L: [IG_like] [IGv] [Tryp_SPc ] by SMART

Other resources with information on 2R0L

Community annotation for 2R0L at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---