2R0N Oxidoreductase date Aug 20, 2007
title The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate
authors K.S.Rao, M.Albro, Z.Fu, B.Narayanan, S.Baddam, H.J.Lee, J.J.Kim, F.E.Frerman
compound source
Molecule: Glutaryl-Coa Dehydrogenase
Chain: A
Synonym: Gcd
Ec: 1.3.99.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 64 2 2
R_factor 0.219 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.650 114.650 126.780 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand FAD, TGC enzyme Oxidoreductase E.C.1.3.99.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe effect of a Glu370Asp mutation in glutaryl-CoA dehydrogenase on proton transfer to the dienolate intermediate., Rao KS, Fu Z, Albro M, Narayanan B, Baddam S, Lee HJ, Kim JJ, Frerman FE, Biochemistry. 2007 Dec 18;46(50):14468-77. Epub 2007 Nov 17. PMID:18020372
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (2r0n.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (2r0n.pdb2.gz) 260 Kb
  • LPC: Ligand-Protein Contacts for 2R0N
  • CSU: Contacts of Structural Units for 2R0N
  • Likely Quarternary Molecular Structure file(s) for 2R0N
  • Structure Factors (168 Kb)
  • Retrieve 2R0N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R0N from S2C, [Save to disk]
  • Re-refined 2r0n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2R0N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2R0N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2R0N, from MSDmotif at EBI
  • Fold representative 2r0n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r0n_A] [2r0n]
  • SWISS-PROT database: [Q92947]
  • Domain organization of [GCDH_HUMAN] by SWISSPFAM
  • Other resources with information on 2R0N
  • Community annotation for 2R0N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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