2R0W Immune System date Aug 21, 2007
title Pfa2 Fab Complexed With Abeta1-8
authors A.S.Gardberg, C.Dealwis
compound source
Molecule: Igg2a Fab Fragment Light Chain
Chain: L
Fragment: Light Chain
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Other_details: Hybridoma

Molecule: Igg2a Fab Fragment Heavy Chain, Fd Portion
Chain: H
Fragment: Fd Portion Of Heavy Chain

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Other_details: Hybridoma

Molecule: Amyloid Beta Peptide Fragment
Chain: Q
Fragment: Octapeptide
Synonym: Amyloid Beta A4 Protein, Fragment
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 1
R_factor 0.208 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.793 43.327 58.456 92.51 94.96 90.55
method X-Ray Diffractionresolution 2.50 Å
ligand NA, YCM enzyme
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceMolecular basis for passive immunotherapy of Alzheimer's disease., Gardberg AS, Dice LT, Ou S, Rich RL, Helmbrecht E, Ko J, Wetzel R, Myszka DG, Patterson PH, Dealwis C, Proc Natl Acad Sci U S A. 2007 Oct 2;104(40):15659-64. Epub 2007 Sep 25. PMID:17895381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (2r0w.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 2R0W
  • CSU: Contacts of Structural Units for 2R0W
  • Likely Quarternary Molecular Structure file(s) for 2R0W
  • Structure Factors (106 Kb)
  • Retrieve 2R0W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R0W from S2C, [Save to disk]
  • Re-refined 2r0w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2R0W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2R0W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2R0W, from MSDmotif at EBI
  • Fold representative 2r0w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r0w_Q] [2r0w] [2r0w_H] [2r0w_L]
  • SWISS-PROT database: [P05067] [P01863] [P01631] [Q811U5]
  • Belongs to the amyloid -protein peptide (app) family according to TCDB.
  • Domain organization of [A4_HUMAN] [GCAA_MOUSE] [KV2A7_MOUSE] [Q811U5_MOUSE] by SWISSPFAM
  • Domains found in 2R0W: [IGc1] [IGv ] by SMART
  • Other resources with information on 2R0W
  • Community annotation for 2R0W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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