2R1G Ribosomal Protein Rna date Aug 22, 2007
title Coordinates Of The Thermus Thermophilus 30s Components Neigh Rbfa As Obtained By Fitting Into The Cryo-Em Map Of A 30s-R Complex
authors P.P.Datta, D.N.Wilson, M.Kawazoe, N.K.Swami, T.Kaminishi, M.R.Sha T.M.Booth, C.Takemoto, P.Fucini, S.Yokoyama, R.K.Agrawal
compound source
Molecule: 16s Ribosomal Rna Helix 1
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 16s Ribosomal Rna Helix 18
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 16s Ribosomal Rna Helix 27
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 16s Ribosomal Rna Helix 28
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 16s Ribosomal Rna Helix 44
Chain: E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 16s Ribosomal Rna Helix 44
Chain: X
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 16s Ribosomal Rna Helix 45
Chain: F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 30s Ribosomal Protein S9
Chain: G
Engineered: Yes

Organism_scientific: Thermus Thermophilus
Organism_taxid: 262724
Strain: Hb27
Gene: Rpsi, Rps9
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S12
Chain: H
Fragment: Residues 5-128
Engineered: Yes

Organism_scientific: Thermus Thermophilus
Organism_taxid: 262724
Strain: Hb27
Gene: Rpsl, Rps12
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 30s Ribosomal Protein S13
Chain: I
Engineered: Yes

Organism_scientific: Thermus Thermophilus
Organism_taxid: 262724
Strain: Hb27
Gene: Rpsm, Rps13
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 12.50 Å
Gene
Ontology
ChainFunctionProcessComponent
G


H


I


Primary referenceStructural aspects of RbfA action during small ribosomal subunit assembly., Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK, Mol Cell. 2007 Nov 9;28(3):434-45. PMID:17996707
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (2r1g.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 2R1G
  • Likely Quarternary Molecular Structure file(s) for 2R1G
  • Retrieve 2R1G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R1G from S2C, [Save to disk]
  • View 2R1G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2R1G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2R1G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r1g_I] [2r1g_D] [2r1g_A] [2r1g_G] [2r1g_X] [2r1g_F] [2r1g_E] [2r1g_B] [2r1g] [2r1g_H] [2r1g_C]
  • SWISS-PROT database: [P61941] [P62655] [P62669]
  • Domain organization of [RS12_THET2] [RS13_THET2] [RS9_THET2] by SWISSPFAM
  • Other resources with information on 2R1G
  • Community annotation for 2R1G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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