2R1U Protein Binding date Aug 23, 2007
title Dj-1 Activation By Catechol Quinone Modification
authors Zhongtao Z., Yue F.
compound source
Molecule: Protein Dj-1
Chain: A, B
Synonym: Oncogene Dj1, Parkinson Disease Protein 7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Park7
Expression_system: Escherichia Coli
Expression_system_strain: B834
Expression_system_vector_type: Vector
Expression_system_vector: Pet
symmetry Space Group: P 31
R_factor 0.185 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.688 75.688 75.045 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (2r1u.pdb1.gz) 64 Kb
  • CSU: Contacts of Structural Units for 2R1U
  • Likely Quarternary Molecular Structure file(s) for 2R1U
  • Structure Factors (2054 Kb)
  • Retrieve 2R1U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R1U from S2C, [Save to disk]
  • Re-refined 2r1u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2R1U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2R1U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2R1U, from MSDmotif at EBI
  • Fold representative 2r1u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r1u] [2r1u_B] [2r1u_A]
  • SWISS-PROT database: [Q99497]
  • Domain organization of [PARK7_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2R1U with the sequences similar proteins can be viewed for 2R1U's classification [PARK7_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PARK7_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2R1U
  • Community annotation for 2R1U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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