2R2P Transferase date Aug 27, 2007
title Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
authors J.R.Walker, D.Cuerrier, C.Butler-Cole, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Structural Genomics Consortium (Sgc)
compound source
Molecule: Ephrin Type-A Receptor 5
Chain: A
Fragment: Kinase Domain: Residues 653-939
Synonym: Tyrosine-Protein Kinase Receptor Ehk-1, Eph Homology Kinase 1, Receptor Protein-Tyrosine Kinase Hek7;
Ec: 2.7.10.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epha5, Ehk1, Hek7
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Ch
symmetry Space Group: P 65 2 2
R_factor 0.199 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.085 80.085 169.237 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand CL, SO4 enzyme Transferase E.C.2.7.10.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (2r2p.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 2R2P
  • CSU: Contacts of Structural Units for 2R2P
  • Likely Quarternary Molecular Structure file(s) for 2R2P
  • Structure Factors (209 Kb)
  • Retrieve 2R2P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R2P from S2C, [Save to disk]
  • Re-refined 2r2p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2R2P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 2R2P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2R2P, from MSDmotif at EBI
  • Fold representative 2r2p from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r2p_A]
  • SWISS-PROT database: [P54756]
  • Domain organization of [EPHA5_HUMAN] by SWISSPFAM
  • Domain found in 2R2P: [TyrKc ] by SMART
  • Alignments of the sequence of 2R2P with the sequences similar proteins can be viewed for 2R2P's classification [EPHA5_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [EPHA5_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 2R2P
  • Community annotation for 2R2P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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