2R2Y	Protein Binding	date	Aug 28, 2007
title	Crystal Structure Of The Proteasomal Rpn13 Pru-Domain
authors	M.Groll, K.Walters, I.Dikic, D.Finley
compound		source
Molecule: Protein Adrm1 Chain: A Fragment: Pru-Domain Synonym: Adhesion-Regulating Molecule 1, 110 Kda Cell Membr Glycoprotein, Gp110, Arm-1; Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Cdna Mus Musculus Gene: Adrm1, Gp110 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 De3 Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Prset
symmetry	Space Group: P 21 21 21	R_factor 0.214 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.428 56.223 63.242 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
note	2R2Y is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction., Schreiner P, Chen X, Husnjak K, Randles L, Zhang N, Elsasser S, Finley D, Dikic I, Walters KJ, Groll M, Nature. 2008 May 22;453(7194):548-52. PMID:18497827

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk] Biological Unit Coordinates (2r2y.pdb1.gz) 20 Kb CSU: Contacts of Structural Units for 2R2Y Likely Quarternary Molecular Structure file(s) for 2R2Y Structure Factors (235 Kb) Retrieve 2R2Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2R2Y from S2C, [Save to disk] Re-refined 2r2y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2R2Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2R2Y

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2R2Y, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2r2y_A] [2r2y] SWISS-PROT database: [Q9JKV1] Domain organization of [ADRM1_MOUSE] by SWISSPFAM

Other resources with information on 2R2Y

Community annotation for 2R2Y at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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