2R3V Transferase date Aug 30, 2007
title The Biochemical And Structural Basis For Feedback Inhibition Of Mevalonate Kinase And Isoprenoid Metabolism
authors Z.Fu, N.E.Voynova, H.M.Miziorko, J.P.Kim
compound source
Molecule: Mevalonate Kinase
Chain: A, B, C, D
Synonym: Mk
Ec: 2.7.1.36
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Mvk
Expression_system: Escherichia Coli
Expression_system_strain: Bl 21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-3d
symmetry Space Group: P 1 21 1
R_factor 0.239 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.030 78.200 109.450 90.00 113.33 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand
enzyme Transferase E.C.2.7.1.36 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceBiochemical and structural basis for feedback inhibition of mevalonate kinase and isoprenoid metabolism., Fu Z, Voynova NE, Herdendorf TJ, Miziorko HM, Kim JJ, Biochemistry. 2008 Mar 25;47(12):3715-24. Epub 2008 Feb 27. PMID:18302342
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (2r3v.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (2r3v.pdb2.gz) 63 Kb
  • Biological Unit Coordinates (2r3v.pdb3.gz) 63 Kb
  • Biological Unit Coordinates (2r3v.pdb4.gz) 62 Kb
  • Biological Unit Coordinates (2r3v.pdb5.gz) 123 Kb
  • Biological Unit Coordinates (2r3v.pdb6.gz) 122 Kb
  • CSU: Contacts of Structural Units for 2R3V
  • Likely Quarternary Molecular Structure file(s) for 2R3V
  • Structure Factors (385 Kb)
  • Retrieve 2R3V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R3V from S2C, [Save to disk]
  • Re-refined 2r3v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2R3V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2R3V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2R3V, from MSDmotif at EBI
  • Fold representative 2r3v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r3v] [2r3v_B] [2r3v_C] [2r3v_D] [2r3v_A]
  • SWISS-PROT database: [Q03426]
  • Domain organization of [KIME_HUMAN] by SWISSPFAM
  • Other resources with information on 2R3V
  • Community annotation for 2R3V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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