OCA Atlas for 2R5J

2R5J

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
I, N, L, F, M, C, E, K, O, D, J, G, B, A, H

Primary reference

Crystal structures of four types of human papillomavirus L1 capsid proteins: understanding the specificity of neutralizing monoclonal antibodies., Bishop B, Dasgupta J, Klein M, Garcea RL, Christensen ND, Zhao R, Chen XS, J Biol Chem. 2007 Oct 26;282(43):31803-11. Epub 2007 Sep 4. PMID:17804402

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (994 Kb) [Save to disk]

Biological Unit Coordinates (2r5j.pdb1.gz) 336 Kb

Biological Unit Coordinates (2r5j.pdb2.gz) 336 Kb

Biological Unit Coordinates (2r5j.pdb3.gz) 337 Kb

CSU: Contacts of Structural Units for 2R5J

Likely Quarternary Molecular Structure file(s) for 2R5J

Structure Factors (2435 Kb)

Retrieve 2R5J in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2R5J from S2C, [Save to disk]

Re-refined 2r5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2R5J in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2r5j] [2r5j_A] [2r5j_B] [2r5j_C] [2r5j_D] [2r5j_E] [2r5j_F] [2r5j_G] [2r5j_H] [2r5j_I] [2r5j_J] [2r5j_K] [2r5j_L] [2r5j_M] [2r5j_N] [2r5j_O]

SWISS-PROT database: [P27232]

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