2R5K Viral Protein date Sep 03, 2007
title Pentamer Structure Of Major Capsid Protein L1 Of Human Papil Type 11
authors B.Bishop, J.Dasgupta, X.S.Chen
compound source
Molecule: Major Capsid Protein L1
Chain: A, B, C, D, E
Engineered: Yes
 Organism_scientific: Human Papillomavirus Type 11
Organism_taxid: 10580
Gene: L1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.289 R_Free 0.317
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.710 159.970 158.440 90.00 101.83 90.00
method X-Ray Diffractionresolution 3.20 Å
note 2R5K is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceCrystal structures of four types of human papillomavirus L1 capsid proteins: understanding the specificity of neutralizing monoclonal antibodies., Bishop B, Dasgupta J, Klein M, Garcea RL, Christensen ND, Zhao R, Chen XS, J Biol Chem. 2007 Oct 26;282(43):31803-11. Epub 2007 Sep 4. PMID:17804402
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (301 Kb) [Save to disk]
  • Biological Unit Coordinates (2r5k.pdb1.gz) 296 Kb
  • CSU: Contacts of Structural Units for 2R5K
  • Likely Quarternary Molecular Structure file(s) for 2R5K
  • Structure Factors (2118 Kb)
  • Retrieve 2R5K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R5K from S2C, [Save to disk]
  • Re-refined 2r5k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2R5K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2R5K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2R5K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r5k_B] [2r5k] [2r5k_A] [2r5k_C] [2r5k_D] [2r5k_E]
  • SWISS-PROT database: [P04012]
  • Domain organization of [VL1_HPV11] by SWISSPFAM
    • Other resources with information on 2R5K
  • Community annotation for 2R5K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science