2R8J Replication, Transferase Dna date Sep 11, 2007
title Structure Of The Eukaryotic Dna Polymerase Eta In Complex Wi D(Gpg)-Cisplatin Containing Dna
authors T.Carell, A.Alt, K.Lammens
compound source
Molecule: Dna Polymerase Eta
Chain: A, B
Fragment: Catalytic Domain
Synonym: Radiation Sensitive Protein 30
Ec: 2.7.7.7
Engineered: Yes
Other_details: Man
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: Yph499 (Atcc 76625)
Gene: Rad30, Dbh1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3 Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pexp007

Molecule: Dna (5'-D(Dgpdtpdgpdgpdapdtpdgpdapdg)-3'
Chain: Q, P
Engineered: Yes
Other_details: Syn

Synthetic: Yes

Molecule: Dna (5'-D(Pdgpdgpdcpdtpdcpdapdtpdcpdcpd 3');
Chain: U, T
Engineered: Yes
Other_details: Syn

Synthetic: Yes
symmetry Space Group: P 41 21 2
R_factor 0.208 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.090 104.090 293.050 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand CA, CPT, DCP enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBypass of DNA lesions generated during anticancer treatment with cisplatin by DNA polymerase eta., Alt A, Lammens K, Chiocchini C, Lammens A, Pieck JC, Kuch D, Hopfner KP, Carell T, Science. 2007 Nov 9;318(5852):967-70. PMID:17991862
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk]
  • Biological Unit Coordinates (2r8j.pdb1.gz) 94 Kb
  • Biological Unit Coordinates (2r8j.pdb2.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 2R8J
  • CSU: Contacts of Structural Units for 2R8J
  • Likely Quarternary Molecular Structure file(s) for 2R8J
  • Structure Factors (179 Kb)
  • Retrieve 2R8J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R8J from S2C, [Save to disk]
  • Re-refined 2r8j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2R8J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2R8J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2R8J, from MSDmotif at EBI
  • Fold representative 2r8j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r8j_U] [2r8j_A] [2r8j_T] [2r8j_P] [2r8j_B] [2r8j] [2r8j_Q]
  • SWISS-PROT database: [Q04049]
  • Domain organization of [POLH_YEAST] by SWISSPFAM
  • Other resources with information on 2R8J
  • Community annotation for 2R8J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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