OCA Atlas for 2R8P

2R8P

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, EDO, T6F

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B

Primary reference

Strain and Near Attack Conformers in Enzymic Thiamin Catalysis: X-ray Crystallographic Snapshots of Bacterial Transketolase in Covalent Complex with Donor Ketoses Xylulose 5-phosphate and Fructose 6-phosphate, and in Noncovalent Complex with Acceptor Aldose Ribose 5-phosphate., Asztalos P, Parthier C, Golbik R, Kleinschmidt M, Hubner G, Weiss MS, Friedemann R, Wille G, Tittmann K, Biochemistry. 2007 Oct 30;46(43):12037-12052. Epub 2007 Oct 3. PMID:17914867

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk]

Biological Unit Coordinates (2r8p.pdb1.gz) 218 Kb

LPC: Ligand-Protein Contacts for 2R8P

CSU: Contacts of Structural Units for 2R8P

Likely Quarternary Molecular Structure file(s) for 2R8P

Structure Factors (1138 Kb)

Retrieve 2R8P in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2R8P from S2C, [Save to disk]

Re-refined 2r8p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2R8P in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2r8p] [2r8p_A] [2r8p_B]

SWISS-PROT database: [P27302]

Domain found in 2R8P: [Transket_pyr ] by SMART

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