2R8X	Hydrolase	date	Sep 11, 2007
title	Crystal Structure Of Yrbi Phosphatase From Escherichia Coli
authors	O.V.Tsodikov, P.Aggarwal, J.R.Rubin, J.A.Stuckey, R.W.Woodard, T.
compound		source
Molecule: 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Phosphat Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P Synonym: Kdo 8-P Phosphatase Ec: 3.1.3.45 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Strain: Bl21 Gene: Yrbi Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B Expression_system_vector_type: Plasmid
symmetry	Space Group: P 1 21 1	R_factor 0.201 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 85.071 156.959 114.407 90.00 96.54 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	CL	enzyme	Hydrolase E.C.3.1.3.45 BRENDA
Gene Ontology	Chain Function Process Component F, N, K, E, M, C, L, A, J, O, P, B, H, D, I, G 3-deoxy-manno-octulosonate-8...
Primary reference	The tail of KdsC: conformational changes control the activity of a haloacid dehalogenase superfamily phosphatase., Biswas T, Yi L, Aggarwal P, Wu J, Rubin JR, Stuckey JA, Woodard RW, Tsodikov OV, J Biol Chem. 2009 Oct 30;284(44):30594-603. Epub 2009 Sep 2. PMID:19726684

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (437 Kb) [Save to disk] Biological Unit Coordinates (2r8x.pdb1.gz) 213 Kb Biological Unit Coordinates (2r8x.pdb2.gz) 222 Kb Biological Unit Coordinates (2r8x.pdb3.gz) 115 Kb Biological Unit Coordinates (2r8x.pdb4.gz) 113 Kb Biological Unit Coordinates (2r8x.pdb5.gz) 109 Kb Biological Unit Coordinates (2r8x.pdb6.gz) 110 Kb LPC: Ligand-Protein Contacts for 2R8X CSU: Contacts of Structural Units for 2R8X Likely Quarternary Molecular Structure file(s) for 2R8X Structure Factors (904 Kb) Retrieve 2R8X in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2R8X from S2C, [Save to disk] Re-refined 2r8x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2R8X in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2R8X

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2R8X, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2r8x_M] [2r8x_F] [2r8x_D] [2r8x] [2r8x_H] [2r8x_G] [2r8x_B] [2r8x_E] [2r8x_L] [2r8x_O] [2r8x_N] [2r8x_K] [2r8x_P] [2r8x_J] [2r8x_I] [2r8x_C] [2r8x_A] SWISS-PROT database: [P67653] Domain organization of [KDSC_ECOL6] by SWISSPFAM

Other resources with information on 2R8X

Community annotation for 2R8X at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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