2RAX Cell Cycle date Sep 17, 2007
title Crystal Structure Of Borealin (20-78) Bound To Survivin (1-1
authors S.G.Hymowitz
compound source
Molecule: Baculoviral Iap Repeat-Containing Protein 5
Chain: A, E, X
Fragment: Residues 1-120
Synonym: Apoptosis Inhibitor Survivin, Apoptosis Inhibitor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Birc5, Api4, Iap4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-De3 Plyss Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28

Molecule: Borealin
Chain: B, F, Y
Fragment: N-Terminal Fragment, Residues 20-78
Synonym: Dasra-B, Hdasra-B, Cell Division Cycle-Associated Pluripotent Embryonic Stem Cell-Related Gene 3 Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdca8, Pescrg3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-De3 Plyss Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21
symmetry Space Group: I 41 2 2
R_factor 0.236 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
145.521 145.521 217.429 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand ZN enzyme
Primary referenceThe mitotic regulator survivin binds as a monomer to its functional interactor Borealin., Bourhis E, Hymowitz SG, Cochran AG, J Biol Chem. 2007 Sep 19;. PMID:17881355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (2rax.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (2rax.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (2rax.pdb3.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2RAX
  • CSU: Contacts of Structural Units for 2RAX
  • Likely Quarternary Molecular Structure file(s) for 2RAX
  • Structure Factors (148 Kb)
  • Retrieve 2RAX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RAX from S2C, [Save to disk]
  • Re-refined 2rax structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RAX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RAX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RAX, from MSDmotif at EBI
  • Fold representative 2rax from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rax] [2rax_B] [2rax_F] [2rax_A] [2rax_Y] [2rax_X] [2rax_E]
  • SWISS-PROT database: [O15392] [Q53HL2]
  • Domain organization of [BIRC5_HUMAN] [BOREA_HUMAN] by SWISSPFAM
  • Domain found in 2RAX: [BIR ] by SMART
  • Other resources with information on 2RAX
  • Community annotation for 2RAX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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