2RDO 50S subunit with EF-G(GDPNP) and RRF bound date
authors Gao, N., Zavialov, A.V., Ehrenberg, M., Frank, J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 9.10
Gene
Ontology
ChainFunctionProcessComponent
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    Primary referenceSpecific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits., Gao N, Zavialov AV, Ehrenberg M, Frank J, J Mol Biol. 2007 Dec 14;374(5):1345-58. Epub 2007 Oct 16. PMID:17996252
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (2rdo.pdb1.gz) 145 Kb
  • CSU: Contacts of Structural Units for 2RDO
  • Likely Quarternary Molecular Structure file(s) for 2RDO
  • Retrieve 2RDO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RDO from S2C, [Save to disk]
    • View 2RDO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2RDO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RDO, from MSDmotif at EBI
  • Fold representative 2rdo from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rdo_V] [2rdo_A] [2rdo_J] [2rdo_H] [2rdo_U] [2rdo_9] [2rdo_R] [2rdo_1] [2rdo_M] [2rdo_L] [2rdo_S] [2rdo_8] [2rdo_X] [2rdo_T] [2rdo_Q] [2rdo_I] [2rdo_2] [2rdo_Y] [2rdo_B] [2rdo_O] [2rdo] [2rdo_C] [2rdo_E] [2rdo_N] [2rdo_4] [2rdo_K] [2rdo_P] [2rdo_G] [2rdo_3] [2rdo_D] [2rdo_Z] [2rdo_W] [2rdo_7] [2rdo_F] [2rdo_0]
  • SWISS-PROT database: [P0A6M8] [P0A7J7] [P0AA10] [P0ADY3] [P02413] [P0ADY7] [P0AG44] [P0C018] [P0A7K6] [P0A7L0] [P0A7L3] [P0AG48] [P61175] [P0ADZ0] [P60624] [P68919] [P0A7L8] [P0A7M6] [P60422] [P0AG51] [P0A7M9] [P0A7N4] [P0A7N9] [P0A7P5] [P0A7Q1] [P0A7Q6] [P60438] [P60723] [P62399] [P0AG55] [P0A7R1] [P0A805]
  • Domain organization of [EFG_ECOLI] [RL11_ECOLI] [RL13_ECOLI] [RL14_ECOLI] [RL15_ECOLI] [RL16_ECOLI] [RL17_ECOLI] [RL18_ECOLI] [RL19_ECOLI] [RL1_ECOLI] [RL20_ECOLI] [RL21_ECOLI] [RL22_ECOLI] [RL23_ECOLI] [RL24_ECOLI] [RL25_ECOLI] [RL27_ECOLI] [RL29_ECOLI] [RL2_ECOLI] [RL30_ECOLI] [RL31_ECOLI] [RL32_ECOLI] [RL33_ECOLI] [RL34_ECOLI] [RL35_ECOLI] [RL36_ECOLI] [RL3_ECOLI] [RL4_ECOLI] [RL5_ECOLI] [RL6_ECOLI] [RL9_ECOLI] [RRF_ECOLI] by SWISSPFAM
  • Domains found in 2RDO: [EFG_C] [EFG_IV] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
    • Other resources with information on 2RDO
  • Community annotation for 2RDO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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