2RFJ	Transcription Regulator	date	Sep 30, 2007
title	Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt)
authors	P.Filippakopoulos, E.Salah, P.Savitsky, T.Keates, E.Parizotto, J. A.C.W.Pike, E.Ugochukwu, F.Von Delft, C.H.Arrowsmith, A.M.Edwar J.Weigelt, M.Sundstrom, S.Knapp, Structural Genomics Consortiu
compound		source
Molecule: Bromodomain Testis-Specific Protein Chain: A, B, C Fragment: Bromo 1 Domain: Residues 21-137 Synonym: Ring3-Like Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Brdt Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta-R3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
symmetry	Space Group: P 21 21 21	R_factor 0.191 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.935 92.679 100.107 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.05 Å
Primary reference	Histone recognition and large-scale structural analysis of the human bromodomain family., Filippakopoulos P, Picaud S, Mangos M, Keates T, Lambert JP, Barsyte-Lovejoy D, Felletar I, Volkmer R, Muller S, Pawson T, Gingras AC, Arrowsmith CH, Knapp S, Cell. 2012 Mar 30;149(1):214-31. PMID:22464331

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (2rfj.pdb1.gz) 20 Kb Biological Unit Coordinates (2rfj.pdb2.gz) 20 Kb Biological Unit Coordinates (2rfj.pdb3.gz) 19 Kb CSU: Contacts of Structural Units for 2RFJ Likely Quarternary Molecular Structure file(s) for 2RFJ Structure Factors (191 Kb) Retrieve 2RFJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2RFJ from S2C, [Save to disk] Re-refined 2rfj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2RFJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2RFJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2RFJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2rfj_A] [2rfj] [2rfj_C] [2rfj_B] SWISS-PROT database: [Q58F21] Domain organization of [BRDT_HUMAN] by SWISSPFAM Domain found in 2RFJ: [BROMO ] by SMART

Other resources with information on 2RFJ

Community annotation for 2RFJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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