2RFJ Transcription Regulator date Sep 30, 2007
title Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt)
authors P.Filippakopoulos, E.Salah, P.Savitsky, T.Keates, E.Parizotto, J. A.C.W.Pike, E.Ugochukwu, F.Von Delft, C.H.Arrowsmith, A.M.Edwar J.Weigelt, M.Sundstrom, S.Knapp, Structural Genomics Consortiu
compound source
Molecule: Bromodomain Testis-Specific Protein
Chain: A, B, C
Fragment: Bromo 1 Domain: Residues 21-137
Synonym: Ring3-Like Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brdt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.259
length a length b length c angle alpha angle beta angle gamma
42.935 92.679 100.107 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
Primary referenceHistone recognition and large-scale structural analysis of the human bromodomain family., Filippakopoulos P, Picaud S, Mangos M, Keates T, Lambert JP, Barsyte-Lovejoy D, Felletar I, Volkmer R, Muller S, Pawson T, Gingras AC, Arrowsmith CH, Knapp S, Cell. 2012 Mar 30;149(1):214-31. PMID:22464331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (2rfj.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (2rfj.pdb2.gz) 20 Kb
  • Biological Unit Coordinates (2rfj.pdb3.gz) 19 Kb
  • CSU: Contacts of Structural Units for 2RFJ
  • Likely Quarternary Molecular Structure file(s) for 2RFJ
  • Structure Factors (191 Kb)
  • Retrieve 2RFJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RFJ from S2C, [Save to disk]
  • Re-refined 2rfj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RFJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RFJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RFJ, from MSDmotif at EBI
  • Fold representative 2rfj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rfj_A] [2rfj] [2rfj_C] [2rfj_B]
  • SWISS-PROT database: [Q58F21]
  • Domain organization of [BRDT_HUMAN] by SWISSPFAM
  • Domain found in 2RFJ: [BROMO ] by SMART
  • Other resources with information on 2RFJ
  • Community annotation for 2RFJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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