2RHP Cell Adhesion date Oct 09, 2007
title The Thrombospondin-1 Polymorphism Asn700ser Associated With Artery Disease Causes Local And Long-Ranging Changes In Pro Structure
authors C.B.Carlson, J.L.Keck, D.F.Mosher
compound source
Molecule: Thrombospondin-2
Chain: A
Fragment: Signature Domain
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Thbs2, Tsp2
Expression_system: Spodoptera Frugiperda
Expression_system_strain: High 5
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pcoco
symmetry Space Group: I 2 2 2
R_factor 0.227 R_Free 0.277
length a length b length c angle alpha angle beta angle gamma
93.892 122.650 155.381 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CA, NAG enzyme

Primary referenceInfluences of the N700S Thrombospondin-1 Polymorphism on Protein Structure and Stability., Carlson CB, Liu Y, Keck JL, Mosher DF, J Biol Chem. 2008 Jul 18;283(29):20069-76. Epub 2008 May 22. PMID:18499674
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (2rhp.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 2RHP
  • CSU: Contacts of Structural Units for 2RHP
  • Likely Quarternary Molecular Structure file(s) for 2RHP
  • Structure Factors (343 Kb)
  • Retrieve 2RHP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RHP from S2C, [Save to disk]
  • Re-refined 2rhp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RHP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RHP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2RHP, from MSDmotif at EBI
  • Fold representative 2rhp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rhp] [2rhp_A]
  • SWISS-PROT database: [P35442]
  • Domain organization of [TSP2_HUMAN] by SWISSPFAM
  • Domain found in 2RHP: [EGF ] by SMART
  • Other resources with information on 2RHP
  • Community annotation for 2RHP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science