2RIL Crystal structure of a putative monooxygenase (YP_001095275.1) from Shewanella loihica PV-4 at 1.26 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.162
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.26
ligand ACT, CL, CSD, MSE, PGO enzyme
note 2RIL is a representative structure
Gene SHEW ; YP
Gene
Ontology
ChainFunctionProcessComponent
A
  • monooxygenase activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2ril.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 2RIL
  • CSU: Contacts of Structural Units for 2RIL
  • Likely Quarternary Molecular Structure file(s) for 2RIL
  • Structure Factors (2057 Kb)
  • Retrieve 2RIL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RIL from S2C, [Save to disk]
  • Re-refined 2ril structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RIL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RIL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RIL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ril_A] [2ril]
  • SWISS-PROT database: [A3QHR8]
  • Domain organization of [A3QHR8_SHELP] by SWISSPFAM
  • Other resources with information on 2RIL
  • Community annotation for 2RIL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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