2RL8 Protein Transport, Sugar Binding Protein date Oct 18, 2007
title Crystal Structure Cation-Dependent Mannose 6-Phosphate Recep 6.5 Bound To M6p
authors L.J.Olson, O.Hindsgaul, J.J.P.Kim, N.M.Dahms
compound source
Molecule: Cation-Dependent Mannose-6-Phosphate Receptor
Chain: A, B
Synonym: Cd Man-6-P Receptor, Cd-Mpr, 46 Kda Mannose 6-Phos Receptor, Mpr 46;
Engineered: Yes
Mutation: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Gene: M6pr
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_strain: Bti-Tn-5b1-4
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 43 21 2
R_factor 0.219 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.659 91.659 85.079 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand M6D, MN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Insights into the mechanism of pH-dependent ligand binding and release by the cation-dependent mannose 6-phosphate receptor., Olson LJ, Hindsgaul O, Dahms NM, Kim JJ, J Biol Chem. 2008 Feb 13;. PMID:18272523
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (2rl8.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 2RL8
  • CSU: Contacts of Structural Units for 2RL8
  • Likely Quarternary Molecular Structure file(s) for 2RL8
  • Structure Factors (1040 Kb)
  • Retrieve 2RL8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RL8 from S2C, [Save to disk]
  • Re-refined 2rl8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RL8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RL8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RL8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rl8_A] [2rl8_B] [2rl8]
  • SWISS-PROT database: [P11456]
  • Domain organization of [MPRD_BOVIN] by SWISSPFAM
  • Other resources with information on 2RL8
  • Community annotation for 2RL8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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